Publications of Mariana Galvao Ferrarini

Ferrarini, M. G.; Siqueira, F. M.; Mucha, S. G.; Palama, T. L.; Jobard, É.; Elena-Herrmann, B.; Vasconcelos, A. T. R.; Tardy, F.; Schrank, I. S.; Zaha, A. et al.; Sagot, M.-F.: Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling. BMC Genomics 17, 353 (2066)

Ferrarini, M. G.; Lopesa, M. R.; Rebollo, R.: Cooperation between symbiotic partners through protein trafficking. Proceedings of the National Academy of Sciences of the United States of America 122 (3), e2424789122 (2025)

Gabiatti, B. P.; Freire, E. R.; da Costa, J. F.; Ferrarini, M. G.; de Matos, T. R. A.; Preti, H.; da Rocha, I. M.; Guimarães, B. G.; Kramer, S.; Zanchin, N. I. T. et al.; Holetz, F. B.: Trypanosoma cruzi eIF4E3- and eIF4E4-containing complexes bind different mRNAs and may sequester inactive mRNAs during nutritional stress. Nucleic Acids Research 53 (2), gkae1181 (2025)

Ferrarini, M. G.; Vallier, A.; Vincent‑Monégat, C.; Dell’Aglio, E.; Gillet, B.; Hughes, S.; Hurtado, O.; Condemine, G.; Zaidman‑Rémy, A.; Rebollo, R. et al.; Parisot, N.; Heddi, A.: Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp. Microbiome 11, 274 (2023)

Grenier, T.; Consuegra, J.; Ferrarini, M. G.; Akherraz, H.; Bai, L.; Dusabyinema, Y.; Rahioui, I.; Silva, P. D.; Gillet, B.; Hughes, S. et al.; Ramos, C. I.; Matos, R. C.; Leulier, F.: Intestinal GCN2 controls Drosophila systemic growth in response to Lactiplantibacillus plantarum symbiotic cues encoded by r/tRNA operons. eLife 12, e76584 (2023)

Lucena, A. C. R.; Ferrarini, M. G.; de Oliveira, W. K.; Marcon, B. H.; Morello, L. G.; Alves, L. R.; Faoro, H.: Modulation of Klebsiella pneumoniae outer membrane vesicle protein cargo under antibiotic treatment. Biomedicines 11 (6), 1515 (2023)

Vallier, A.; Dell’Aglio, E.; Ferrarini, M. G.; Hurtado, O.; Vincent-Monégat, C.; Heddi, A.; Rebollo, R.; Zaidman-Rémy, A.: Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model. Frontiers in Ecology and Evolution 11, 1152183 (2023)

Ferrarini, M. G.; Vallier, A.; Dell’Aglio, E.; Balmand, S.; Vincent-Monégat, C.; Debbache, M.; Maire, J.; Parisot, N.; Zaidman-Rémy, A.; Heddi, A. et al.; Rebollo, R.: Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity. Frontiers in Physiology 14, 1142513 (2023)

Homberg, N.; Ferrarini, M. G.; Gaspin, C.; Sagot, M.-F.: MicroRNA target identification: Revisiting accessibility and seed anchoring. Genes 14 (3), 664 (2023)

Moraga, C.; Sanchez, E.; Ferrarini, M. G.; Gutierrez, R. A.; Vidal, E. A.; Sagot, M.-F.: BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data. GigaScience 11, giac093 (2022)

Ferrarini, M. G.; Dell’Aglio, E.; Vallier, A.; Balmand, S.; Vincent‑Monégat, C.; Hughes, S.; Gillet, B.; Parisot, N.; Zaidman‑Rémy, A.; Vieira, C. et al.; Heddi, A.; Rebollo, R.: Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system. Microbiome 10, 156 (2022)

Lal, A.; Ferrarini, M. G.; Gruber, A. J.: Investigating the human host-ssRNA virus interaction landscape using the SMEAGOL toolbox. Viruses 14 (7), 1436 (2022)

Ferrarini, M. G.; Ziska, I.; Andrade, R.; Julien-Laferrière, A.; Duchemin, L.; Jr, R. M. C.; Mary, A.; Vinga, S.; Sagot, M.-F.: Totoro: Identifying active reactions during the transient state for metabolic perturbations. Frontiers in Genetics 13, 815476 (2022)

Parisot, N.; Vargas-Chávez, C.; Goubert, C.; Baa-Puyoulet, P.; Balmand, S.; Beranger, L.; Blanc, C.; Bonnamour, A.; Boulesteix, M.; Burlet, N. et al.; Calevro, F.; Callaerts, P.; Chancy, T.; Charles, H.; Colella, S.; Barbosa, A. D. S.; Dell’Aglio, E.; Genova, A. D.; Febvay, G.; Gabaldón, T.; Ferrarini, M. G.; et al.: The transposable element-rich genome of the cereal pest Sitophilus oryzae. BMC Biology 19, 241 (2021)

Marin, P.; Jaquet, A.; Picarle, J.; Fablet, M.; Merel, V.; Delignette-Muller, M.-L.; Ferrarini, M. G.; Gibert, P.; Vieira, C.: Phenotypic and transcriptomic responses to stress differ according to population geography in an invasive species. Genome Biology and Evolution 13 (9), evab208 (2021)

Clapes, T.; Polyzou, A.; Prater, P.; Sagar; Morales-Hernández, A.; Ferrarini, M. G.; Kehrer, N.; Lefkopoulos, S.; Bergo, V.; Hummel, B. et al.; Obier, N.; Maticzka, D.; Bridgeman, A.; Herman, J. S.; Ilik, I.; Klaeylé, L.; Rehwinkel, J.; McKinney-Freeman, S.; Backofen, R.; Akhtar, A.; Cabezas-Wallscheid, N.; Sawarkar, R.; Rebollo, R.; Grün, D.; Trompouki, E.: Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration. Nature Cell Biology 23, pp. 704 - 717 (2021)

Ferrarini, M. G.; Lal, A.; Rebollo, R.; Gruber, A. J.; Guarracino, A.; Gonzalez, I. M.; Floyd, T.; de Oliveira, D. S.; Shanklin, J.; Beausoleil, E. et al.; Pusa, T.; Pickett, B. E.; Aguiar-Pulido, V.: Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis. Communications Biology 4, 590 (2021)

Borderes, M.; Gasc, C.; Prestat, E.; Ferrarini, M. G.; Vinga, S.; Boucinha, L.; Sagot, M.-F.: A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog. NAR: genomics and bioinformatics 3 (1), lqab009 (2021)

Ferrarini, M. G.; Nisimura, L. M.; Girard, R. M. B. M.; Alencar, M. B.; Fragoso, M. S. I.; Araújo-Silva, C. A.; de Veiga, A. A.; Abud, A. P. R.; Nardelli, S. C.; Vommaro, R. C. et al.; Mariano, A.; France-Sagota, M.; Rodrigues, A.: Dichloroacetate and pyruvate metabolism: Pyruvate dehydrogenase kinases as targets worth investigating for effective therapy of Toxoplasmosis. mSphere 6 (1), e01002-20 (2021)

Marin, P.; Jaquet, A.; Picarle, J.; Fablet, M.; Merel, V.; Delignette-Muller, M.-L.; Ferrarini, M. G.; Gibert, P.; Vieira, C.: Resistome analysis of bloodstream infection bacterial genomes reveals a specific set of proteins involved in antibiotic resistance and drug efflux. NAR: Genomics and Bioinformatics 2 (3), lqaa055 (2020)